Phones Provisioning: template not updating right

If you change the DSS keys here:
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You set overwrite to YES, save it and later set it to NO and save it it will mess up the config file. Order of keys is wrong then.
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Only fix: chose a different template, save it and then you should switch back to the original template.

I haven’t detected any weird behavior.

Could you please share more details and proof about the issue?

Custom DSS Keys
Custom DSS Keys

After Disabling Custom DSS Keys
After Disabling the Custom DSS Key